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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015815085.1_cds_XP_016498157.1_12217
CDS Infomation

[gene=LOC107816924] [db_xref=GeneID:107816924] [protein=FRIGIDA-like protein 5] [protein_id=XP_016498157.1] [location=complement(join(3420..3764,3854..4029,5586..6074,6179..6968,7055..7096))] [gbkey=CDS]
Sequence

ATGAATGTTTGCCAGAAAGAGACCTGCTCATTCGAAGAAAAGATTGAGGCCATTGAACAA
CAGGTTGCTTCTATTAGAGCTGTTATCAGATGTATTCTGAATTACAAACTTCAGTTTAAA
TATCCGATAGAACACCTTGAAGAATGTATAGAAGTGCTTACAAGGCAGAAGGAAGATCAA
GCTGCATTATGTGTCATTTATGAGGCTAAAACGCCAGAGCAAGCGAATGTGAATCAGATG
GGCTCTACTAATCCATCTATTCCCACAGGCACCAAGGCCCTCAATTCCGCATCATTCTCT
GCTAGAACCCCCTCGTGCACTTTAGGTCATTCCAATTCCATGGCCATTATCCTTATGAAC
ATGAGTGGAGAGGATTTGCAGAATTTCTTAAACAAACATTTGAAGGAGCACAAGTTGTTG
CGCAGTGAAGTCTTTAGTGCTCTTCAAATGTCGCTGGACTCGGGGATGCTTGTGTTGGAA
GCACTGGTAGGGTTTTATCCTCCAGACTATCAGAAAGAAGAGATTGAATTTAATCGTAAT
ATTATCAGGCAGAGTTGCATCCTTTTATTAGAACAGTTCATGGAACTTTCGCCGGAGATT
AAACCAGAGGCTAAATTAGAAGCTAGCAAGCTTGCATTTGCCTGGAAAGCAAAGATGATG
GGTGAAATGGAAAACCATTTGGCAATCTTGGGTTTTCTTCTTCTTGTAGGTAGCTACAGA
TTGGCTTCTGCCTTCGATAAAGATGAACTTGAGAGTTTGTATCACAAGGTATCACCGCAT
GTGAATACATCTGAAATCTGTCACGCCCTTGGTATTTCAAATAATACTTCAAAAGAATCG
AAGAGACACAAGGCTCAAGGCTATACAGATGAATCTGTTTGCAACAACATGGATATGAAA
TGCGAAGGACATGATGTAATCTGCAATTGTGCCTCAAGTTTACTTCGTACATCAGATCCT
GCTTTGCTTGTACTGGATGCTTTCCGGAGTTGTCATCCCACAAAATTAGGGAGGTGTGAA
AACTTCCCATCAGTTATGCGGAGCTTCTCTGATCTGTTGGACCAGCTGAGAGAAACTTCT
CCAGAAATTAAACCTCATGTTAAAGCGGGGGCTATTGCATTTGCAGTTGATTGGTATTCT
ACATTGATCGGGTCCCAGCTAAATACATCCGAGTTCTTGGCATTTGTGCAGCTTTTAGCT
ATTTATAAAATAATAGACTCTTTCCATTCAGATGCACTTTTTGGTCTTTTGGAGAAAGTT
CAACCAACTGAAAGTGTTGTTACTTTGTTCAAAATCCTTGGGTTGACAGATAAGATCCGA
TGCTTCGTCCAAAATCTTATAAATAAAAAGCAGTGGATGGTGGCATTTACTTATGTCTAT
GAGTTTGATCTTGTTAACTTGGTTTCACCAGTGATGCTCCTGAGGGATTATGTAAGACAC
TCAGAAGAGATTGCCAAGAAAATACTTCATGCTGGAAATAGTTCTCATCGAGCCCAAATG
AAGGCTATAAATTATGAAATAAATGCACTAAGAAATGCAGTTAGACATATTGTGGATCCT
GGTCTTCAGTCGGAATATTCACTTTCTCAACTTCAAGAACAGATCGAAAAACTTCAATGT
CAGATGTCAAACTCGAGTCAATCAAGCTCAAATCGAAACTTTATTGCTGAGTTCCGACAA
GTTAAAACAAATAAAGGAACTTGCAGATCTGCTCCAATTGCTCAAGTGCGAAAAGAGCTC
ATGAAGAAACGTTCTGCCCCAGCTGGTGACACTGATTTTATCCACAGGGCTCGAGGAAAA
CAGAACTTTAAGCGCCATCGTCATTTATCCATGAGGAGATGA

Peptide Sequence

PEP ID

XP_016498157.1
PEP Infomation

PREDICTED: FRIGIDA-like protein 5 [Nicotiana tabacum]
Sequence

MNVCQKETCSFEEKIEAIEQQVASIRAVIRCILNYKLQFKYPIEHLEECIEVLTRQKEDQ
AALCVIYEAKTPEQANVNQMGSTNPSIPTGTKALNSASFSARTPSCTLGHSNSMAIILMN
MSGEDLQNFLNKHLKEHKLLRSEVFSALQMSLDSGMLVLEALVGFYPPDYQKEEIEFNRN
IIRQSCILLLEQFMELSPEIKPEAKLEASKLAFAWKAKMMGEMENHLAILGFLLLVGSYR
LASAFDKDELESLYHKVSPHVNTSEICHALGISNNTSKESKRHKAQGYTDESVCNNMDMK
CEGHDVICNCASSLLRTSDPALLVLDAFRSCHPTKLGRCENFPSVMRSFSDLLDQLRETS
PEIKPHVKAGAIAFAVDWYSTLIGSQLNTSEFLAFVQLLAIYKIIDSFHSDALFGLLEKV
QPTESVVTLFKILGLTDKIRCFVQNLINKKQWMVAFTYVYEFDLVNLVSPVMLLRDYVRH
SEEIAKKILHAGNSSHRAQMKAINYEINALRNAVRHIVDPGLQSEYSLSQLQEQIEKLQC
QMSNSSQSSSNRNFIAEFRQVKTNKGTCRSAPIAQVRKELMKKRSAPAGDTDFIHRARGK
QNFKRHRHLSMRR

Transcript Sequence

Gene sequence data has not been registered.